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 Isn't Shintoism the main religion of Japan? Much like Confucianism, ancestor worship, respect your elders, this sort of thing. 
 It was. Now it's all integrated into "Japenese culture". 
 lol
this is a good explanation 
 Similiar phenomenon to Christianity in the West; many secular households still are culturally Christian. 
 but contrariwise

a lot of Japanese are still culturally secular
even if they are believers
and they bring that aji to their Christianity